Switch edition causing damage to controllers that persists outside of game

This all started when my long term controller starting having an issue whilst playing Minecraft where the sticks wouldn't respond accurately with random timing, I would flick the stick right and it would take a second or 2 to realize "oh he is holding right" and then flick it back and have to wait for it to respond, then it started happening with the buttons.

I go to play Mario kart and realize the issue, thinking it's my controller, I open a new one, finish Mario kart and go back to Minecraft, again, 30 minutes later the same issue, so I go ahead and use the GameCube to USB adapter for smash WiiU, and it breaks the same way, even for the GameCube itself with no issues before.

I get my off brand switch controller and try using it on several games before Minecraft, no issue, go to Minecraft and no less then 5 minutes later it's doing it again.

I hard disconnect all controllers and reboot switch, all controllers are stil, effected upon plug in, I get my old joycons out, they work on every game, but 3 minutes into Minecraft it breaks.

I use my WiiU controller through adapter, it works for every game, for 3 days of use, then play Minecraft and it breaks again.

I am now down several controllers, and now will not be playing Minecraft until I can get confirmation this is fixed.

I should clarify I have used both the switch pro controller and joycons.