Windows 10: Click Lag/Freeze/Crash from Mouse Input

When playing Minecraft on Windows 10, I get an issue that makes it near unplayable. Both Left and Right clicking will cause the game to stop or freeze for a second before it returns to normal. Rarely, it will crash the game, closing immediately.

EDIT: It is not FPS Lag but actually it disables mouselook for a second with each click.

EDIT 2: The problem occurs with Mice input. Using a gaming mouse to bind keyboard keys to the extra buttons and using those will not cause lag or freezes and crashes.