Using a structure block causes structures to be load incorrectly.

When I save a structure that has water (source blocks) and I load that structure the water is there, but doesn't work correctly it is like 'ghost water'... like it doesn't even exist. Here I have screenshots, here you can also see where there is suppose to be bubble columns there are none.

 

To recreate this take a structure block save a structure with water and load it somewhere else.