Custom Texture pack Render bug

I recently created a texture pack, that has a custom redstone dust texture, when I place the Redstone down, the dust doesn't form the custom pattern that's in it's texture pack folder. It forms a red and black textured pattern, acting like the texture is not there. I'm not sure if this is some sort of texture pack or a rendering engine bug.

Please note: I used texture ender.jar to convert the texture pack, the redstone_dust.png file also came with a redstone_dust.txt files. Which had math equations in it., the redstone_cross file also came this way.
The texture pack is a 64 x 64 HD.